Bronze level automatically awarded US beta

This data has achieved Bronze level on 25 October 2015 which means this data makes a great start at the basics of publishing open data.

ECOHAB: Van Dolah_F- Karenia brevis Cell Cycle Analysis for Determination of In Situ Growth Rates (NODC Accession 0000538)

Summary

Type of release
ongoing release of a series of related datasets

Data Licence
Not Applicable

Content Licence
Creative Commons CCZero

Verification
automatically awarded

Release Date
27 September 2015
Modified Date
27 September 2015
Update Frequency
asNeeded
Publishers
National Oceanic and Atmospheric Administration, Department of Commerce
Identifier
ecohab-van-dolah-f-karenia-brevis-cell-cycle-analysis-for-determination-of-in-situ-growth-rates
Landing Page
http://catalog.data.gov/dataset/ecohab-van-dolah-f-karenia-brevis-cell-cycle-analysis-for-determination-of-in-situ-growth-rates
Temporal Coverage
1 September 1996 — 29 September 1999
Language
eng

Community verification

Other people can verify whether the answers on this certificate are correct.

This certificate is automatically awarded.

Sign in to verify or report this certificate


Description

The reported growth rates of Karenia brevis vary from 0.2 to 0.5 divisions per day, both in laboratory and field populations observed. This growth rate alone is not sufficiently high to account for its dominance in the water column. However, careful studies have not been carried out to determine if the documented slow growth rate of K. brevis persists throughout bloom development, or if different rates of growth might characterize bloom initiation, growth, maintenance, and termination phases. For example, it is conceivable that an "explosive" growth stage occurs early during bloom initiation/growth stages that serves to boost the population size, which has not been previously documented. Like most autotrophic dinoflagellates studied, cell division in K. brevis blooms is phased to the diel cycle. Diel phasing of cell division imposes a maximum potential growth rate of 1 division per day in dinoflagellates. The occurrence of an "explosive growth stage" would require the release of K. brevis cells from mechanisms which regulate this circadian rhythm. To address this question, diel phasing of the cell cycle of K. brevis was first documented in laboratory isolates of K. brevis. In situ diel studies were then carried out on naturally occurring blooms of K. brevis during the R/V Pelican cruise (1996) and during ECOHAB process cruises carried out during years 1-5 of ECOHAB Florida (1997-2001). Cell cycle distribution of K. brevis cells and correlation of cell cycle events with vertical migration was determined by sampling at multiple depths (minimum of surface and bottom, depending on depth). For shipboard field studies, whole water samples of K. brevis (1-2 L) were collected every 2 or 3 h throughout a diel cycle, fixed in glutaraldehyde and stored in the dark. Further processing of samples was carried out in the laboratory following completion of the cruise. The flow cytometry method method of Van Dolah and Leighfield was used (1999. J. Phycology 35:1404-1411). Glutaraldehyde-fixed whole water samples were filtered through a 100 micrometer nitex screen to remove large phytoplankton/zooplankton/debris, then filtered by gravity flow through a 10 micrometer nylon screen to collect K. brevis cells. Cells were collected from the screen by rinsing with 2% glutaraldehyde into a 50 ml polypropylene centrifuge tube, then centrifuged at 1000 x g. The cell pellet was then treated with 2 ml of 20 degrees C methanol overnight to remove pigments. Methanol extracted cells were collected by centrifugation (500xg for 3 min) and resuspended in phosphate buffered saline + 0.5% Tween 20 containing 10 micrograms. mL-1 propidium iodide (PI, Sigma, St. Louis, MO) and 10 mg/ml Rnase (Sigma, St. Louis, MO). DNA analysis was carried out on an Epics MXL4 flow cytometer (Coulter, Miami, FL) using a 5 W argon laser with a 488 nm excitation wavelength and 635 nm emission wavelength. Cell aggregates were eliminated by gating all histograms within the linear range using a peak-area cytogram for PI fluorescence. Cell cycle distribution was analyzed using Multicycle software (Phoenix Flow Systems, San Diego, CA). Purpose: The research conducted in this portion of the Florida ECOHAB Program will provide insight into which the role of endogenous cellular rhythms in regulating the accumulation growth phase of K. brevis blooms decline by conducting cell cycle studies. This work entails both both laboratory and field experiments. Laboratory studies will be carried out to identify cell cycle regulatory mechanisms in K. brevis, using western blotting to identify cyclins and cyclin dependent kinases in K. brevis, and to determine their relative levels of expression in actively growing versus stationary phase K. brevis populations. In addition we will characterize their expression during the course of the circadian day, as it correlates with cell cycle phase. In situ labeling of K. brevis cells with fluorescently labeled antibodies to cyclins will assist in discerning whether cyclin expression might be suitable for use as a biomarker of actively dividing blooms in the field. Field studies will use flow cytometry to determine in situ growth rates of blooms of K. brevis during the yearly ECOHAB process cruises in order to establish a multiyear record of growth rates in early and late bloom stages.


General Information


Legal Information

This dataset has been created by US Government which means it is required to be in the public domain. However US copyright law only allows open access by US citizens, we have assumed the data is equivalently licensed as CC0 for the rest of the world as this is in the spirit of the US Government’s Open Data policy.
  • The rights statement is at

    http://catalog.data.gov/dataset/ecohab-van-dolah-f-karenia-brevis-cell-cycle-analysis-for-determination-of-in-situ-growth-rates Do you think this data is incorrect? Let us know

  • Outside the US, this data is available under

    Creative Commons CCZero Do you think this data is incorrect? Let us know

  • There are

    yes, and the rights are all held by the same person or organisation Do you think this data is incorrect? Let us know

  • The content is available under

    Creative Commons CCZero Do you think this data is incorrect? Let us know

  • This data contains

    no data about individuals Do you think this data is incorrect? Let us know


Practical Information

  • The data appears in this collection

    http://catalog.data.gov/organization/noaa-gov Do you think this data is incorrect? Let us know

  • This data changes

    no Do you think this data is incorrect? Let us know

  • The data is

    backed up offsite Do you think this data is incorrect? Let us know


Technical Information


Social Information

  • The documentation includes machine-readable data for

    title Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    description Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    identifier Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    landing page Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    release frequency Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    publisher Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    distribution(s) Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    release date Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    modification date Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    temporal coverage Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    spatial/geographical coverage Do you think this data is incorrect? Let us know

  • The documentation includes machine-readable data for

    language Do you think this data is incorrect? Let us know

  • The documentation about each distribution includes machine-readable data for

    title Do you think this data is incorrect? Let us know

  • The documentation about each distribution includes machine-readable data for

    description Do you think this data is incorrect? Let us know

  • The documentation about each distribution includes machine-readable data for

    release date Do you think this data is incorrect? Let us know

  • The documentation about each distribution includes machine-readable data for

    a URL to access the data Do you think this data is incorrect? Let us know

  • The documentation about each distribution includes machine-readable data for

    a URL to download the dataset Do you think this data is incorrect? Let us know

  • Find out how to contact someone about this data at

    http://catalog.data.gov/dataset/ecohab-van-dolah-f-karenia-brevis-cell-cycle-analysis-for-determination-of-in-situ-growth-rates Do you think this data is incorrect? Let us know

  • Find out how to suggest improvements to publication at

    http://www.data.gov/issue/?media_url=http://catalog.data.gov/dataset/ecohab-van-dolah-f-karenia-brevis-cell-cycle-analysis-for-determination-of-in-situ-growth-rates Do you think this data is incorrect? Let us know